From putriaura2013 at gmail.com Tue Apr 2 10:21:02 2013 From: putriaura2013 at gmail.com (Putri Aura) Date: Tue, 2 Apr 2013 16:21:02 +0800 Subject: [ilastik-announce] Z stack Loading Message-ID: Dear all, I am new in using ilastik. After watching the video about the 3D classification, I wanted to load a 3D EM 8bit-tif z-stack but only got a single image on screen. The stack contains 100 slices (1024x1024x100) with 6 nm pixel size for x and y, 30 nm for voxel depth. The 3d stack from the demo folder could display as a 3d stack. I have no idea how to load the *.tif stack. Please someone could help me with this question. I appreciate your any assistance. Best regards, aura -------------- next part -------------- An HTML attachment was scrubbed... URL: From putriaura2013 at gmail.com Mon Apr 8 15:07:33 2013 From: putriaura2013 at gmail.com (Putri Aura) Date: Mon, 8 Apr 2013 21:07:33 +0800 Subject: [ilastik-announce] Fwd: About Loading 3D stack In-Reply-To: References: Message-ID: ---------- Forwarded message ---------- From: Putri Aura Date: 2013/4/8 Subject: About Loading 3D stack To: "Bernhard X. Kausler" Dear Bernhard, Did you get the sample tif 3D stack? I tried the "Add" and "Load stack" again, but I obtain the same result. Please have a look at the screenshots to stacks from demo and uploaded stacks. i don't know what wrong with my test image. it could be displayed as a 3 slices by using the ImageJ. I appreciate your assistance. Best, aura -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: load stack.jpg Type: image/jpeg Size: 159840 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: load stack2.jpg Type: image/jpeg Size: 102770 bytes Desc: not available URL: From burcin at erocal.org Wed Mar 5 23:15:27 2014 From: burcin at erocal.org (Burcin Erocal) Date: Wed, 5 Mar 2014 23:15:27 +0100 Subject: [ilastik-announce] Google Summer of Code Projects - please advertise Message-ID: <20140305231527.50b5761c@carl.erocal.org> Hi, this year ilastik is participating in the Google Summer of Code [1] via the lmonade project [2]. [1] http://www.google-melange.com/gsoc/homepage/google/gsoc2014 [2] http://www.google-melange.com/gsoc/org2/google/gsoc2014/lmonade We have many exciting projects [3] for students to work (from home) over the summer, get mentored by experts in the field and get paid by Google [4]. [3] http://wiki.lmona.de/get_involved/projects [4] http://www.google-melange.com/gsoc/document/show/gsoc_program/google/gsoc2014/help_page#1._How_do_payments_work The application deadline for students is March 21st. These days they should be talking to potential mentors and forming their application. http://wiki.lmona.de/get_involved/gsoc#Prospective_Students If you know any student who might be interested or have access to any forum such students might read, please forward this announcement. Cheers, Burcin Possible project ideas related to ilastik: Software infrastructure projects - Use OpenGL for blending layers in Volumina - Multiscale views based on pyramids in volumina - Improve 2d/3d object browser in volumina - User Experience Improvements in ilastik - VIGRA Java bindings - Parallelization of the VIGRA library Algorithms & data structures projects - Lazy connected components in VIGRA - Image features for machine learning in VIGRA Detailed descriptions available here: http://wiki.lmona.de/get_involved/projects